Journal club meetings are on Mondays at 2-3 pm through video conference.
B. A. Gibson, L. K. Doolittle, M. W. G. Schneider, L. E. Jensen, N. Gamarra, L. Henry, D. W. Gerlich, S. Redding, and M. K. Rosen
Cell, 179, 470-484, 2019
presented by Bercem
Jianyi Yang, Ivan Anishchenko, Hahnbeom Park, Zhenling Peng, Sergey Ovchinnikov, and David Baker, bioRxiv (2019).
presented by Lim
Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, et al. (2018) PLOS Genetics 14(12): e1007872.
presented by Gilberto
J. Phys. Chem. Lett. 2019, 10, 18, 5667-5673
presented by Nawrocki
presented by Bercem
J. Chem. Theory Comput. 2019, 15, 4318-4331
presented by Nawrocki
Guterres, H., Lee, H. S., and Im, W., JCTC (2019).
presented by Lim
I. Alshareedah, T. Kaur, J. Ngo, H. Seppala, L.-A. D. Kounatse, W. Wang, M. M. Moosa, and P. R. Banerjee.
J. Am. Chem. Soc., 141, 37, 2019
presented by Bercem
J. Phys. Chem. Lett. 2018, 9, 7110-7116
presented by Nawrocki
Noé F, Olsson S, Köhler J, Wu H (2019) Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning. Science 365(6457):eaaw1147–13.
presented by Lim
D.T. McSwiggen, A.S. Hansen, S.S. Teves, H. Marie Nelly, Y. Hao, A.B. Heckert, K.K. Umemoto, C. Dugast-Darzacq, R. Tijan and X. Darzacq.
Elife, 8, e47098, 2019
presented by Bercem
J. Chem. Theory Comput. 2019 15, 6, 3854-3867
presented by Nawrocki
G. L. Dignon, W. Zheng, Y. C. Kim, R. B. Best, J. Mittal
PLOS Computational Biology, 14(1): e1005941, 2018
presented by Bercem
Stasiewicz, J., Mukherjee, S., Nithin, C., & Bujnicki, J. M. (2019). QRNAS: software tool for refinement of nucleic acid structures. BMC structural biology, 19(1), 5.
presented by Maciej
C. K. M. Tse, J. Xu, L. Xu, F. K. Sheong, S. Wang, H. Y. Chow, X. Gao,.X. Li, P. P-H. Cheung, D. Wang, Y. Zhang and X. Huang
Nature Catalysis, 2, 228-235, 2019
presented by Bercem
AlQuraishi M (2019) End-to-End Differentiable Learning of Protein Structure. Cell Syst. doi:10.1016/j.cels.2019.03.006. (Available online Apr. 17, 2019, in Press)
presented by Lim
J. Am. Chem. Soc., 2019, 141 (11), pp 4660–4669
presented by Nawrocki
Kruse, H., Banas, P., & Šponer, J. (2018). Investigations of stacked DNA base-pair steps: highly accurate stacking interaction energies, energy decomposition, and many-body stacking effects. Journal of chemical theory and computation, 15(1), 95-115.
Presented by Maciej
Vitor H. Teixeira, Diogo Vila-Vicosa, Pedro B. P. S. Reis, and Miguel Machuqueiro
Journal of Chemical Theory and Computation (2016, 12 (3), 930-934)
presented by Nawrocki
G. Stirnemann and F. Sterpone
Journal of Chemical Theory and Computation (2015, 11, 5573-5577)
presented by Nawrocki