Lim Heo

Lim Heo

Postdoctoral Research Associate

Biochemistry and Molecular Biology

 

Contact:

huhlim@gmail.com

+1-517-353-6743

Publications:

2021
  11. Andriy Kryshtafovych, John Moult, Wendy M. Billings, Dennis Della Corte, Krzysztof Fidelis, Sohee Kwon, Kliment Olechnovic, Chaok Seok, Ceslovas Venclovas, Jonghun Won, CASP-COVID participants (Michael Feig, Lim Heo, et al.): Modeling SARS-CoV-2 proteins in the CASP-commons experiment Proteins (2021) 89, 1987-1996 Abstract PDF
  10. Elise Rivett, Lim Heo, Michael Feig, Eric Hegg: Biosynthesis and trafficking of heme o and heme a: New structural insights and their implications for reaction mechanisms and prenylated heme transfer Critical Reviews in Biochemistry and Molecular Biology (2021) 56, 640-668 Abstract PDF
  9. Lim Heo, Giacomo Janson, Michael Feig: Physics-Based Protein Structure Refinement in the Era of Artifical Intelligence Proteins (2021) 89, 1870-1887 Abstract PDF
  8. Lim Heo, Collin F. Arbour, Giacomo Janson, Michael Feig: Improved Sampling Strategies for Protein Model Refinement Based on Molecular Dynamics Simulation Journal of Chemical Theory and Computation (2021) 17, 1931-1943 Abstract PDF
2020
  7. Lim Heo, Michael Feig: Modeling of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Proteins by Machine Learning and Physics-Based Refinement bioRxiv (2020) 2020.03.25.008904, Abstract PDF
  6. Lim Heo, Michael Feig: High-accuracy protein structures by combining machine-learning with physics-based refinement Proteins (2020) 88, 637-642 Abstract PDF
2019
  5. Lim Heo, Collin F. Arbour, Michael Feig: Driven to Near-Experimental Accuracy by Refinement via Molecular Dynamics Simulations Proteins (2019) 87, 1263-1275 Abstract PDF
2018
  4. Lim Heo, Michael Feig: Experimental Accuracy in Protein Structure Refinement via Molecular Dynamics Simulations Proceedings of the National Academy of Sciences, USA (2018) 115, 13276-13281 Abstract PDF
  3. Bercem Dutagaci, Lim Heo, Michael Feig: Structure Refinement of Membrane Proteins via Molecular Dynamics Simulations Proteins (2018) 86, 738-750 Abstract PDF
  2. Lim Heo, Michael Feig: PREFMD: A web server for protein structure refinement via molecular dynamics simulations Bioinformatics (2018) 34, 1063-1065 Abstract PDF
  1. Lim Heo, Michael Feig: What makes it difficult to refine protein models further via molecular dynamics simulations? Proteins (2018) 86, 177-188 Abstract PDF