locPREFMD

local Protein structure REFinement via Molecular Dynamics

Improvement of the local stereochemistry of protein structure models.

M. Feig: J. Chem. Inf. Model. (2016) 56, 1304-1312

This method is not meant to improve RMSD or GDT scores with respect to the native structure.

Provide a PDB file containing a single chain. If an email address is provided,  the results will be sent once the refinement is completed (expect 5-30 minutes). Otherwise, the results can be retrieved via a link that is given after job submission.

This server is unvailable during the CASP season (May-September).