Resources

Computational biochemistry is very computer-intensive research. We use a variety of different computer systems, from desktop workstations to parallel clusters. All computers run variants of the Linux operating system.

Ganglia pages of lab resources. Availability of storage resources.

 

Lab workstations

All workstations have Intel CPUs and run Linux.

ponto 2x8core Intel E5-2665, 2.4 GHz, 64 GB, Quadro K2000, K20 Grzegorz (BCH 218)
pbpier 2x12core Intel E5-2670 v3 2.3 GHz, 128 GB, Quadro M5000 Bercem (BCH 218)
blacks 4core Intel i7 2.93 GHz, 8 GB, GeForce GT 330 (BCH 218)
dstreet 4core Intel i7 2.8 GHz, 8 GB, GeForce GTX 660 (BCH 218)
torreypines 2x4core Intel E5504 2.0 GHz, 6 GB, Quadro FX580 Jaie (BCH 218)
birdrock 2x4core Intel E5504 2.0 GHz, 6 GB, Quadro FX580 (BCH 218)
tourmaline 4core Intel i7 2.8 GHz, 8 GB, GeForce GT 330 (BCH 218)
windansea 2x12core Intel E5-2670 v3 2.3 GHz, 128 GB, Quadro M5000 Lim (BCH 220)
pipes 2x8core Intel E5-2665, 2.4 GHz, 64 GB, Quadro K2000 Charlie (BCH 220)
tamarack 2x4core Intel E5420 2.5 GHz, 8 GB, GeForce GTX 280 (BCH 220)
grandview 2x6core Intel E5-2630 2.3 GHz, 96 GB, Quadro 600 Maciej (BCH 220)
theshores 2x6core Intel E5-2620 2.0 GHz, 64 GB, Quadro 600 Michael (BCH 218A)

 

Compute Nodes

pinkN (greenc39-greenc43) 2x8core Intel E5-2680 2.7 GHz, 32 GB 1-5
pink6 (greenc44)
2x4core Intel E5420 2.5 GHz, 8 GB, 1.2 TB
6
redNN 2x6core Intel X5650 2.66 GHz, 12 GB 1-10
orange1 2x4core Intel E5430 2.66 GHz, 16 GB 1
orangeNN 2x4core Intel X5355 2.66 GHz, 8 GB 2-5
orangeNN 2x4core Intel E5430 2.66 GHz, 8 GB 6-12
yellowN (greenc29-greenc32) 2x12core Intel E5-2680 v3 2.5 GHz, 64 GB, 1xK40m,1xGTX 980 Ti 1-4
greenN (greenc01-greenc06) 2x6core Intel E5-2620 v3 2.4 GHz, 32 GB, 2xGTX 980Ti 1-6
greenN(greenc07-greenc11) 2x14core Intel E5-2683 v3 2.0 GHz, 64 GB, 2xGTX 1080 7-11
greenN(greenc12-greenc14) 2x14core Intel E5-2683 v3 2.0 GHz, 64 GB, 2xGTX 1080 Ti 12-14

 

Servers

Storage servers are greensX and other lab servers are blueX. As a general rule calculations should not be run on these machines.

greens1 2x6core Intel E5-2630v2 2.6 GHz, 32 GB, 60 TB storage for active projects
greens2 2x8core Intel E5-2630v3 2.4 GHz, 32 GB, 80 TB storage for active projects
greens3 2x4core Intel E5420 2.5 GHz, 8 GB, 8 TB archival storage
greens4 2x6core Intel E5-2620v3 2.4 GHz, 16 GB, 60 TB storage for active projects
greens5 2x4core Intel X5550 2.66 GHz, 16 GB, 36 TB archival storage
greens6 2x4core Intel E5-2609 2.40 GHz, 16 GB, 10 TB storage for active projects
 
blue1 2x8core Intel E5-2680 2.7 GHz, 32 GB main lab server, web, mail, wiki etc.
blue2 2x Xeon 2.8 GHz, 2 GB, 32 bit data mirror (PDB, sequence DB)
blue3 2x Xeon 3.06 GHz, 2 GB, 32 bit PDF database
blue4 2x Xeon 2.8 GHz, 4 GB, 32 bit daily backup
blue5 2x8core Intel E5-2609 v4 1.7 GHz, 32 GB, 1.4/4 TB home directories
blue6 2x4core Intel E5620 2.4 GHz, 12 GB, 2 TB web service
blue7 2x Intel Xeon 3.4 GHz, 2 GB, 4 TB locPREFMD/PREFMD web service
blue8 2x Xeon 2.8 GHz, 4 GB, 32 bit web service
blue9 2x4core Intel E5405 2.0 GHz, 16 GB web service
feigstore 2x Intel Xeon 3.0 GHz, 2 GB, 2 TB secondary backup