Journal club meetings are on Mondays at 5-6 pm in BCH 202.
Kriegel, Franziska, et al. "The temperature dependence of the helical twist of DNA." Nucleic acids research (2018).
Presented by Maciej
M. S. Safari, M. C. Byington, J. C. Conrad, P. G. Vekilov
J. Phys. Chem. B, 2017, 121, pp 9091–9101
presented by Nawrocki
J. Jimenez, S. Doerr, G. Martinez-Rosell, A. S. Rose, G. De Fabritiis, Bioinformatics, 33(19), 2017, 3036-3042
Presented by Jaie
Zhang, T., Ma, T., Wang, Q., and Ma, J., The Journal of Chemical Physics, 149, 072319 (2018).
presented by Lim
Spasic, Aleksandar, et al. "Improving RNA nearest neighbor parameters for helices by going beyond the two-state model." Nucleic acids research 46.10 (2018): 4883-4892.
Presented by Maciej
Max Linke, Jurgen Kofinger, and Gerhard Hummer
J. Phys. Chem. B, 2018, 122 (21), pp 5630–5639
presented by Nawrocki
K. Olesen, N. Awasthi, D. S. Bruhn, W. Pezeshkian and H. Khandelia
J. Chem. Theory Comput., 2018, 14, 3342-3350
presented by Bercem
Robustelli, P., Stefano, P., Shaw, D.E. (2018). Proceedings of the National Academy of Sciences, 115(21), E4758-66.
presented by Jaie
Qian, Z., Zhurkin, V. B., & Adhya, S. (2017). Proceedings of the National Academy of Sciences, 114(46), 12225-12230.
presented by Maciej
Narayanan, C. et al., Structure, 2018, 26 (3), p426-436.
presented by Lim
N. Plattner, S. Doerr, G. De Fabritiis, and F. Noe
Nature Chemistry volume 9, pages 1005–1011 (2017)
presented by Nawrocki
N. Pokhrel and L. Maibaum.
J. Chem. Theory Comput., 2018, 14, 1762-1771
presented by Bercem
Park, H., Ovchinnikov, S., Kim, D. E., DiMaio, F., and Baker, D., Proc. Natl. Acad. Sci, USA, 2018, 115 (12) 3054-3059.
presented by Lim
Lioy, Virginia S., et al. "Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins." Cell (2018).
Presented by Maciej
F. Meng, M.M.J. Bellaiche, J-Y. Kim, G.H. Zerze, R. Best, H.S. Chung, Biophysical Journal, 2018, 114, 870-884
presented by Jaie
T. V. Mishanina, M. Z. Palo, D. Nayak, R. A. Mooney and R. Landick.
PNAS, 2017, 114, .
presented by Bercem
Rahul Sarma, Ka-Yiu Wong, Gillian C. Lynch, and B. Montgomery Pettitt
J. Phys. Chem. B 2018.
presented by Nawrocki
Tan, Dazhi, et al. "RNA force field with accuracy comparable to state-of-the-art protein force fields." Proceedings of the National Academy of Sciences(2018): 201713027.
Presented by Maciej
Davey, J. A., Damry, A. M., Goto, N. K., and Chica, R. A., Nat. Chem. Biol., 2017, 13, 1280-1285.
presented by Lim
J.E. Condon, A. Jayaraman, J. Phys. Chem. B, 2018, 122, 1929-1939
presented by Jaie