Journal club meetings are on Mondays at 5-6 pm in BCH 202.
B. Treeck, D. S. W. Protter, T. Matheny, A. Khong, C. D. Link, and R. Parker
PNAS, 115, 2734-2739,2018
presented by Bercem
Jinbo Xu, Distance-based Protein Folding powered by Deep Learning, bioXriv (uploaded Nov. 11, 2018).
presented by Lim
Erlenbach, N., Grünewald, C., Krstic, B., Heckel, A., & Prisner, T. F. (2018). ‘End-to-End’stacking of small dsRNA. RNA, rna-068130.
A.E. Sifain, N. Lubbers, B.T. Nebgen, J.S. Smith, A.Y. Lokhov, O. Isayev, A.E. Roitberg, K. Barros, S. Tretiak
Journal of Physical Chemistry Letters, 2018, 9, 4495-4501
Presented by Jaie
Z. Bashardanesh and D. van der Spoel
J. Phys. Chem. B, 2018, 122 (33), pp 8018–8027
presented by Nawrocki
M. Boehning, C. Dugast-Darzacq, M. Rankovic, A. S. Hansen, T. Yu,.H. Marie-Nelly, D. T. McSwiggen, G. Kokic, G. M. Dailey, P. Cramer*, X. Darzacq* and M. Zweckstetter
Nature Structural & Molecular Biology, 25, 833-840, 2018
presented by Bercem
Wehmeyer, C. and Noé, F., The Journal of Chemical Physics, 148, 241703 (2018).
presented by Lim
Kriegel, Franziska, et al. "The temperature dependence of the helical twist of DNA." Nucleic acids research (2018).
Presented by Maciej
M. S. Safari, M. C. Byington, J. C. Conrad, P. G. Vekilov
J. Phys. Chem. B, 2017, 121, pp 9091–9101
presented by Nawrocki
J. Jimenez, S. Doerr, G. Martinez-Rosell, A. S. Rose, G. De Fabritiis, Bioinformatics, 33(19), 2017, 3036-3042
Presented by Jaie
Zhang, T., Ma, T., Wang, Q., and Ma, J., The Journal of Chemical Physics, 149, 072319 (2018).
presented by Lim
Spasic, Aleksandar, et al. "Improving RNA nearest neighbor parameters for helices by going beyond the two-state model." Nucleic acids research 46.10 (2018): 4883-4892.
Presented by Maciej
Max Linke, Jurgen Kofinger, and Gerhard Hummer
J. Phys. Chem. B, 2018, 122 (21), pp 5630–5639
presented by Nawrocki
K. Olesen, N. Awasthi, D. S. Bruhn, W. Pezeshkian and H. Khandelia
J. Chem. Theory Comput., 2018, 14, 3342-3350
presented by Bercem
Robustelli, P., Stefano, P., Shaw, D.E. (2018). Proceedings of the National Academy of Sciences, 115(21), E4758-66.
presented by Jaie
Qian, Z., Zhurkin, V. B., & Adhya, S. (2017). Proceedings of the National Academy of Sciences, 114(46), 12225-12230.
presented by Maciej
Narayanan, C. et al., Structure, 2018, 26 (3), p426-436.
presented by Lim
N. Plattner, S. Doerr, G. De Fabritiis, and F. Noe
Nature Chemistry volume 9, pages 1005–1011 (2017)
presented by Nawrocki
N. Pokhrel and L. Maibaum.
J. Chem. Theory Comput., 2018, 14, 1762-1771
presented by Bercem
Park, H., Ovchinnikov, S., Kim, D. E., DiMaio, F., and Baker, D., Proc. Natl. Acad. Sci, USA, 2018, 115 (12) 3054-3059.
presented by Lim