Journal club meetings are on Mondays at 2-3 pm through video conference.
Saar, K. L., et al. (2021) PNAS, 118(15). https://doi.org/10.1073/pnas.2019053118
presented by Gilberto
Schenkmayerova, A., Pinto, G.P., Toul, M. et al. Engineering the protein dynamics of an ancestral luciferase. Nat Commun 12, 3616 (2021). https://doi-org.proxy1.cl.msu.edu/10.1038/s41467-021-23450-z
presented by Lim
Bremer, A., et al. (2022). Nature Chemistry, 14(2), 196–207. https://doi.org/10.1038/s41557-021-00840-w
presented by Gilberto
Sanchez-burgos, I., Espinosa, J. R., & Joseph, J. A. (2021). https://www.biorxiv.org/content/10.1101/2021.10.07.463486v1
presented by Gilberto
Dannenhoffer-Lafage, T., & Best, R. B. (2021). JPC B, 125(16), 4046–4056. https://doi.org/10.1021/acs.jpcb.0c11479
presented by Gilberto
Townshend, R. J. L.; Eismann, S.; Watkins, A. M.; Rangan, R.; Karelina, M.; Das, R.; Dror, R. O., Geometric deep learning of RNA structure. Science 2021, 373 (6558), 1047-1051.
presented by Lim
Das, S., Lin, Y.-H., Vernon, R. M., Forman-Kay, J. D., & Chan, H. S. (2020) PNAS, 117(46), 28795–28805. https://doi.org/10.1073/pnas.2008122117
presented by Gilberto
Jumper, J.; Evans, R.; Pritzel, A.; Green, T.; Figurnov, M.; Ronneberger, O.; Tunyasuvunakool, K.; Bates, R.; Žídek, A.; Potapenko, A.; Bridgland, A.; Meyer, C.; Kohl, S. A. A.; Ballard, A. J.; Cowie, A.; Romera-Paredes, B.; Nikolov, S.; Jain, R.; Adler, J.; Back, T.; Petersen, S.; Reiman, D.; Clancy, E.; Zielinski, M.; Steinegger, M.; Pacholska, M.; Berghammer, T.; Bodenstein, S.; Silver, D.; Vinyals, O.; Senior, A. W.; Kavukcuoglu, K.; Kohli, P.; Hassabis, D., Highly accurate protein structure prediction with AlphaFold. Nature 2021.
presented by Lim
Simm and Hernández-Lobato (2020) Proceedings of the 37th International Conference on Machine Learning
Presented by Giacomo
Joseph, J. A., Espinosa, J. R., Sanchez-Burgos, I., Garaizar, A., Frenkel, D., & Collepardo-Guevara, R. (2021). Biophysical Journal, 120(7), 1219–1230. https://doi.org/10.1016/j.bpj.2021.01.031
presented by Gilberto
Jing et al. (2021) Ninth International Conference on Learning Representations
Presented by Giacomo
Paloni, M., Bussi, G., & Barducci, A. (2021). Protein Science, pro.4109. https://doi.org/10.1002/pro.4109
presented by Gilberto
Wang D, Zhang L, Wang H, E W. arXiv. 2021.
presented by Lim
Greener and Jones, (2021) bioRxiv
Presented by Giacomo
Kaur, T., Raju, M., Alshareedah, I. et al. Nat Commun 12, 872 (2021). https://doi.org/10.1038/s41467-021-21089-4
presented by Gilberto
Yiming Jin, Linux O. Johannissen, Sam Hay: Prediction new protein conformations from molecular dynamics simulation conformational landscapes and machine learning. Proteins (2021)
presented by Michael
Rao R, Liu J, Verkuil R, Meier J, Canny JF, Abbeel P, et al. MSA Transformer. bioRxiv. 2021.
presented by Lim
Norn et al., (2021) PNAS
Presented by Giacomo
Fanalista, F., Deshpande, S., Lau, A., Pawlik, G., & Dekker, C. (2018). Advanced Biosystems, 2(9), 1800136. https://doi.org/10.1002/adbi.201800136
presented by Gilberto
Carroll, E.C., Latorraca, N.R., Lindner, J.M., Maguire, B.C., Pelton, J.G., and Marqusee, S. Proc. Natl. Acad. Sci. U.S.A. (2021).
presented by Lim