Journal club meetings are on Mondays at 5-6 pm in BCH 202.
Majumdar, B. B., Prytkova, V., Wong, E. K., Freites, J. A., Tobias, D. J., and Heyden, M., JCTC (2019) 15 (2), 1399–1408
presented by Lim
C. Dienemann, B Schwalb, S. Schilbach, and P. Cramer
Molecular Cell, 73, 97-106.e4, 2019
presented by Bercem
Biochemistry, 2018, 57 (11), 1681–1684
presented by Nawrocki
Jiang Wang, Christoph Wehmeyer, Frank Noé, and Cecilia Clementi, Machine Learning of coarse-grained Molecular Dynamics Force Fields, arXiv (uploaded Dec. 08, 2018).
presented by Lim
Templeton, Clark, and Ron Elber. "Why Does RNA Collapse? The Importance of Water in a Simulation Study of Helix–Junction–Helix Systems." Journal of the American Chemical Society 140.49 (2018): 16948-16951.
presented by Maciej
V. Nguemaha and H.-X. Zhou
Scientific Reports, 8:6728, 2018
presented by Bercem
Phys. Chem. Chem. Phys., 2018,20, 19581-19594
presented by Nawrocki
B. Treeck, D. S. W. Protter, T. Matheny, A. Khong, C. D. Link, and R. Parker
PNAS, 115, 2734-2739,2018
presented by Bercem
Jinbo Xu, Distance-based Protein Folding powered by Deep Learning, bioXriv (uploaded Nov. 11, 2018).
presented by Lim
Erlenbach, N., Grünewald, C., Krstic, B., Heckel, A., & Prisner, T. F. (2018). ‘End-to-End’stacking of small dsRNA. RNA, rna-068130.
A.E. Sifain, N. Lubbers, B.T. Nebgen, J.S. Smith, A.Y. Lokhov, O. Isayev, A.E. Roitberg, K. Barros, S. Tretiak
Journal of Physical Chemistry Letters, 2018, 9, 4495-4501
Presented by Jaie
Z. Bashardanesh and D. van der Spoel
J. Phys. Chem. B, 2018, 122 (33), pp 8018–8027
presented by Nawrocki
M. Boehning, C. Dugast-Darzacq, M. Rankovic, A. S. Hansen, T. Yu,.H. Marie-Nelly, D. T. McSwiggen, G. Kokic, G. M. Dailey, P. Cramer*, X. Darzacq* and M. Zweckstetter
Nature Structural & Molecular Biology, 25, 833-840, 2018
presented by Bercem
Wehmeyer, C. and Noé, F., The Journal of Chemical Physics, 148, 241703 (2018).
presented by Lim
Kriegel, Franziska, et al. "The temperature dependence of the helical twist of DNA." Nucleic acids research (2018).
Presented by Maciej
M. S. Safari, M. C. Byington, J. C. Conrad, P. G. Vekilov
J. Phys. Chem. B, 2017, 121, pp 9091–9101
presented by Nawrocki
J. Jimenez, S. Doerr, G. Martinez-Rosell, A. S. Rose, G. De Fabritiis, Bioinformatics, 33(19), 2017, 3036-3042
Presented by Jaie
Zhang, T., Ma, T., Wang, Q., and Ma, J., The Journal of Chemical Physics, 149, 072319 (2018).
presented by Lim
Spasic, Aleksandar, et al. "Improving RNA nearest neighbor parameters for helices by going beyond the two-state model." Nucleic acids research 46.10 (2018): 4883-4892.
Presented by Maciej
Max Linke, Jurgen Kofinger, and Gerhard Hummer
J. Phys. Chem. B, 2018, 122 (21), pp 5630–5639
presented by Nawrocki