Journal club

Tesei, G., & Lindorff-Larsen, K. (2022). Open Research Europe, 2, 94. https://doi.org/10.12688/openreseurope.14967.1

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presented by Gilberto

Tejedor, A. R., et al (2021) Biophysical Journal, 120(23), 5169–5186 https://doi.org/10.1016/j.bpj.2021.11.003

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presented by Gilberto

Lebold, K. M., & Best, R. B. (2022). JPC B, 126(12), 2407–2419. https://doi.org/10.1021/acs.jpcb.2c00424

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presented by Gilberto

Laghmach, R., et al. (2022). IScience, 25(4), 104105. https://doi.org/10.1016/j.isci.2022.104105

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presented by Gilberto

Saar, K. L., et al. (2021) PNAS, 118(15). https://doi.org/10.1073/pnas.2019053118

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presented by Gilberto

Schenkmayerova, A., Pinto, G.P., Toul, M. et al. Engineering the protein dynamics of an ancestral luciferase. Nat Commun 12, 3616 (2021). https://doi-org.proxy1.cl.msu.edu/10.1038/s41467-021-23450-z

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presented by Lim

Bremer, A., et al. (2022). Nature Chemistry, 14(2), 196–207. https://doi.org/10.1038/s41557-021-00840-w

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presented by Gilberto

Sanchez-burgos, I., Espinosa, J. R., & Joseph, J. A. (2021). https://www.biorxiv.org/content/10.1101/2021.10.07.463486v1

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presented by Gilberto

Dannenhoffer-Lafage, T., & Best, R. B. (2021). JPC B, 125(16), 4046–4056. https://doi.org/10.1021/acs.jpcb.0c11479

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presented by Gilberto

Townshend, R. J. L.;  Eismann, S.;  Watkins, A. M.;  Rangan, R.;  Karelina, M.;  Das, R.; Dror, R. O., Geometric deep learning of RNA structure. Science 2021, 373 (6558), 1047-1051.

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presented by Lim

Das, S., Lin, Y.-H., Vernon, R. M., Forman-Kay, J. D., & Chan, H. S. (2020) PNAS, 117(46), 28795–28805. https://doi.org/10.1073/pnas.2008122117

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presented by Gilberto

Jumper, J.;  Evans, R.;  Pritzel, A.;  Green, T.;  Figurnov, M.;  Ronneberger, O.;  Tunyasuvunakool, K.;  Bates, R.;  Žídek, A.;  Potapenko, A.;  Bridgland, A.;  Meyer, C.;  Kohl, S. A. A.;  Ballard, A. J.;  Cowie, A.;  Romera-Paredes, B.;  Nikolov, S.;  Jain, R.;  Adler, J.;  Back, T.;  Petersen, S.;  Reiman, D.;  Clancy, E.;  Zielinski, M.;  Steinegger, M.;  Pacholska, M.;  Berghammer, T.;  Bodenstein, S.;  Silver, D.;  Vinyals, O.;  Senior, A. W.;  Kavukcuoglu, K.;  Kohli, P.; Hassabis, D., Highly accurate protein structure prediction with AlphaFold. Nature 2021.

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presented by Lim

Simm and Hernández-Lobato (2020) Proceedings of the 37th International Conference on Machine Learning

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Presented by Giacomo

Joseph, J. A., Espinosa, J. R., Sanchez-Burgos, I., Garaizar, A., Frenkel, D., & Collepardo-Guevara, R. (2021). Biophysical Journal, 120(7), 1219–1230. https://doi.org/10.1016/j.bpj.2021.01.031

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presented by Gilberto

Jing et al. (2021) Ninth International Conference on Learning Representations

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Presented by Giacomo

Paloni, M., Bussi, G., & Barducci, A. (2021). Protein Science, pro.4109. https://doi.org/10.1002/pro.4109

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presented by Gilberto

Wang D, Zhang L, Wang H, E W. arXiv. 2021.

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presented by Lim

Greener and Jones, (2021) bioRxiv

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Presented by Giacomo