MMTSB
Tool Set Documentation

Difference between revisions of "showcluster.pl"

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This script lists clusters that have been previously generated
 
This script lists clusters that have been previously generated
from ensemble structures with <docmark>enscluster.pl</docmark>.
+
from ensemble structures with [[enscluster.pl]].
 
The ensemble tag is required as argument and the ensemble
 
The ensemble tag is required as argument and the ensemble
 
directory may be given with <B>-dir</B>.<BR>
 
directory may be given with <B>-dir</B>.<BR>
 +
 
The output lists for each cluster the tag, the number of
 
The output lists for each cluster the tag, the number of
 
structure elements and the number of subclusters.<BR>
 
structure elements and the number of subclusters.<BR>
 +
 
== Options ==
 
== Options ==
  
 
; -help : usage information
 
; -help : usage information
 
+
; -dir workdir : ensemble directory
 +
; -ctag alttag : read cluster data from <TT>alttag.cluster</TT> file
  
 
== Examples ==
 
== Examples ==
  
 
<mmtsbToolExample cmd="showcluster.pl" set="/apps/mmtsb/bench/showcluster.pl-test/test1"></mmtsbToolExample>
 
<mmtsbToolExample cmd="showcluster.pl" set="/apps/mmtsb/bench/showcluster.pl-test/test1"></mmtsbToolExample>

Latest revision as of 12:50, 30 July 2009

Usage

usage:   showcluster.pl [options] tag
options: [-dir workdir]
         [-ctag tag]

Show source


Description

This script lists clusters that have been previously generated from ensemble structures with enscluster.pl. The ensemble tag is required as argument and the ensemble directory may be given with -dir.

The output lists for each cluster the tag, the number of structure elements and the number of subclusters.

Options

-help 
usage information
-dir workdir 
ensemble directory
-ctag alttag 
read cluster data from alttag.cluster file

Examples

showcluster.pl -dir data sample
lists clusters generated previously with enscluster.pl.

t               16     3
  t.1              3     0
  t.2             11     2
    t.2.1            1     0
    t.2.2           10     3
      t.2.2.1          8     0
      t.2.2.2          1     0
      t.2.2.3          1     0
  t.3              2     0