MMTSB
Tool Set Documentation

Difference between revisions of "rgyr.pl"

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; -help : usage information
 
; -help : usage information
; -caonly : use only C-alpha atoms for calculating the radius of gyration
+
; -caonly : use only C-alpha atoms for calculating the radius of gyration (otherwise all non-hydrogen atoms are used)
  
 
== Examples ==
 
== Examples ==
  
 
<mmtsbToolExample cmd="rgyr.pl" set="/apps/mmtsb/bench/rgyr.pl-test/test1"></mmtsbToolExample>
 
<mmtsbToolExample cmd="rgyr.pl" set="/apps/mmtsb/bench/rgyr.pl-test/test1"></mmtsbToolExample>

Revision as of 01:45, 28 July 2009

Usage

usage: rgyr.pl -cofm x y z -caonly [pdbFile]

Show source


Description

This script calculates the radius of gyration in Ångstrom for a given structure.

Options

-help 
usage information
-caonly 
use only C-alpha atoms for calculating the radius of gyration (otherwise all non-hydrogen atoms are used)

Examples

rgyr.pl 1vii.exp.pdb
determines the radius of gyration

9.389212