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Difference between revisions of "loopModel.pl"
From MMTSB
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; -help : usage information | ; -help : usage information | ||
| − | + | ; -loop [chain]inx:sequence[:secstr][=...] : provide information on which residues to model and optionally provide secondary structure information | |
| + | ; -models number : number of models to be generated | ||
== Examples == | == Examples == | ||
Revision as of 15:02, 30 July 2009
Usage
usage: loopModel.pl [options] [PDBfile]
options: [-loop inx:sequence[:secstr][=inx:sequence[:secstr]]]
[-models number]
Description
This script uses Modeller to build missing loops in a given PDB structure.
The script will try to guess the location of the Modeller script but it is
better to provide the location with the environment variable MODELLEREXEC.
The output from the file is a series of files named model.N.pdb depending on how many models are requested and a list of energies on
standard output with the Modeller scores for each file.
Options
- -help
- usage information
- -loop [chain]inx:sequence[:secstr][=...]
- provide information on which residues to model and optionally provide secondary structure information
- -models number
- number of models to be generated