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Difference between revisions of "loopModel.pl"
From MMTSB
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== Description == | == Description == | ||
| + | This script uses Modeller to build missing loops in a given PDB structure.<BR> | ||
| + | |||
| + | The script will try to guess the location of the Modeller script but it is | ||
| + | better to provide the location with the environment variable <TT>MODELLEREXEC</TT>.<BR> | ||
| + | |||
| + | The output from the file is a series of files named <TT>model.N.pdb</TT> depending on how many models are requested and a list of energies on | ||
| + | standard output with the Modeller scores for each file.<BR> | ||
== Options == | == Options == | ||
Revision as of 14:59, 30 July 2009
Usage
usage: loopModel.pl [options] [PDBfile]
options: [-loop inx:sequence[:secstr][=inx:sequence[:secstr]]]
[-models number]
Description
This script uses Modeller to build missing loops in a given PDB structure.
The script will try to guess the location of the Modeller script but it is
better to provide the location with the environment variable MODELLEREXEC.
The output from the file is a series of files named model.N.pdb depending on how many models are requested and a list of energies on
standard output with the Modeller scores for each file.
Options
- -help
- usage information