MMTSB
Tool Set Documentation

Difference between revisions of "countIntCont.pl"

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== Description ==
 
== Description ==
  
 +
This tool counts the number of heavy-atom contacts at the interface between
 +
two chains.
  
 
== Options ==
 
== Options ==
  
 
; -help : usage information
 
; -help : usage information
 +
; -distcut value : distance cutoff to determine whether residues are in contact
 +
; -chainA id : first chain to be analyzed
 +
; -chainB id : second chain to be analyzed
  
 +
== Examples ==
  
== Examples ==
+
<mmtsbToolExample cmd="countIntCont.pl" set="/apps/mmtsb/bench/countIntCont.pl-test/test1"></mmtsbToolExample>

Latest revision as of 02:34, 28 July 2009

Usage

usage:   countIntCont.pl [options] [PDBfile]
options: [-distcut num] [-chainA id] [-chainB id]

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Description

This tool counts the number of heavy-atom contacts at the interface between two chains.

Options

-help 
usage information
-distcut value 
distance cutoff to determine whether residues are in contact
-chainA id 
first chain to be analyzed
-chainB id 
second chain to be analyzed

Examples

countIntCont.pl -chainA A -chainB B 1brs.AB.pdb
determines the number of contacts between the two chains A and B of this protein complex

153 atomic contacts between chains A and B