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Difference between revisions of "countIntCont.pl"
From MMTSB
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; -help : usage information | ; -help : usage information | ||
| + | ; -distcut value : distance cutoff to determine whether residues are in contact | ||
| + | ; -chainA id : first chain to be analyzed | ||
| + | ; -chainB id : second chain to be analyzed | ||
| + | == Examples == | ||
| − | == | + | <mmtsbToolExample cmd="countIntCont.pl" set="/apps/mmtsb/bench/countIntCont.pl-test/test1"></mmtsbToolExample> |
Latest revision as of 02:34, 28 July 2009
Usage
usage: countIntCont.pl [options] [PDBfile] options: [-distcut num] [-chainA id] [-chainB id]
Description
This tool counts the number of heavy-atom contacts at the interface between two chains.
Options
- -help
- usage information
- -distcut value
- distance cutoff to determine whether residues are in contact
- -chainA id
- first chain to be analyzed
- -chainB id
- second chain to be analyzed
Examples
countIntCont.pl -chainA A -chainB B 1brs.AB.pdb
determines the number of contacts between the two chains A and B of this protein complex
153 atomic contacts between chains A and B