MMTSB
Tool Set Documentation

Difference between revisions of "countIntCont.pl"

From MMTSB
Jump to: navigation, search
Line 12: Line 12:
  
 
; -help : usage information
 
; -help : usage information
 
+
; -distcut value : distance cutoff to determine whether residues are in contact
 +
; -chainA id : first chain to be analyzed
 +
; -chainB id : second chain to be analyzed
  
 
== Examples ==
 
== Examples ==

Revision as of 02:30, 28 July 2009

Usage

usage:   countIntCont.pl [options] [PDBfile]
options: [-distcut num] [-chainA id] [-chainB id]

Show source


Description

This tool counts the number of heavy-atom contacts at the interface between two chains.

Options

-help 
usage information
-distcut value 
distance cutoff to determine whether residues are in contact
-chainA id 
first chain to be analyzed
-chainB id 
second chain to be analyzed

Examples