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Difference between revisions of "Main Page"
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| − | ==Structure preparation== | + | == Structure preparation == |
convpdb.pl | convpdb.pl | ||
| Line 6: | Line 6: | ||
mutateNA.pl | mutateNA.pl | ||
| − | + | == Structure analysis == | |
centerOfMass.pl | centerOfMass.pl | ||
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lsqfit.pl | lsqfit.pl | ||
mindist.pl | mindist.pl | ||
| + | qscore.pl | ||
| + | rgyr.pl | ||
| + | rms.pl | ||
| + | vicinity.pl | ||
| − | + | == All-Atom Modeling == | |
enerAmber.pl | enerAmber.pl | ||
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pdb2traj.pl | pdb2traj.pl | ||
processDCD.pl | processDCD.pl | ||
| + | scalarCHARMM.pl | ||
| + | |||
| + | == SICHO Lattice Modeling == | ||
| + | |||
| + | genchain.pl | ||
| + | geninput.pl | ||
| + | checkchain.pl | ||
| + | genrestr.pl | ||
| + | genseq.pl | ||
| + | hlamc.pl | ||
| + | latticeener.pl | ||
| + | latticesim.pl | ||
| + | rebuild.pl | ||
| + | xtracttra.pl | ||
| + | |||
| + | == Replica Exchange Sampling == | ||
| + | |||
| + | aarex.pl | ||
| + | aarexAmaber.pl | ||
| + | latrex.pl | ||
| + | gorex.pl | ||
| + | hlamcrex.pl | ||
| + | readArchive.pl | ||
| + | rexanalysis.pl | ||
| + | rexinfo.pl | ||
| + | rexserver.pl | ||
| + | writeArchive.pl | ||
| + | |||
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| − | + | == Ensemble Computing == | |
bestcluster.pl | bestcluster.pl | ||
calcprop.pl | calcprop.pl | ||
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ensrun.pl | ensrun.pl | ||
getprop.pl | getprop.pl | ||
| + | showcluster.pl | ||
| + | jobserver.pl | ||
| + | setprop.pl | ||
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| − | + | == Structure Prediction == | |
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| − | + | buildModel.pl | |
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psiblast.pl | psiblast.pl | ||
psipred.pl | psipred.pl | ||
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Revision as of 02:00, 11 August 2006
Contents
Structure preparation
convpdb.pl complete.pl mutate.pl mutateNA.pl
Structure analysis
centerOfMass.pl cluster.pl contact.pl countIntCont.pl dihed.pl lsqfit.pl mindist.pl qscore.pl rgyr.pl rms.pl vicinity.pl
All-Atom Modeling
enerAmber.pl enerCHARMM.pl analyzeCHARMM.pl equiCHARMM.pl genPSF.pl mdAmber.pl mdCHARMM.pl minAmber.pl minCHARMM.pl nmaCHARMM.pl pbCHARMM.pl pdb2traj.pl processDCD.pl scalarCHARMM.pl
SICHO Lattice Modeling
genchain.pl geninput.pl checkchain.pl genrestr.pl genseq.pl hlamc.pl latticeener.pl latticesim.pl rebuild.pl xtracttra.pl
Replica Exchange Sampling
aarex.pl aarexAmaber.pl latrex.pl gorex.pl hlamcrex.pl readArchive.pl rexanalysis.pl rexinfo.pl rexserver.pl writeArchive.pl
Ensemble Computing
bestcluster.pl calcprop.pl checkin.pl enscluster.pl enscut.pl enseval.pl ensfiles.pl enslatsim.pl ensmin.pl ensrun.pl getprop.pl showcluster.pl jobserver.pl setprop.pl
Structure Prediction
buildModel.pl psiblast.pl psipred.pl