Difference between revisions of "showcluster.pl"

Revision as of 12:50, 30 July 2009

Usage

usage:   showcluster.pl [options] tag
options: [-dir workdir]
         [-ctag tag]

Show source

Description

This script lists clusters that have been previously generated from ensemble structures with enscluster.pl. The ensemble tag is required as argument and the ensemble directory may be given with -dir.

The output lists for each cluster the tag, the number of structure elements and the number of subclusters.

Options

-help: usage information
-dir workdir: ensemble directory
-ctag alt: read cluster data from alt.cluster file

Examples

showcluster.pl -dir data sample
lists clusters generated previously with enscluster.pl.

t               16     3
  t.1              3     0
  t.2             11     2
    t.2.1            1     0
    t.2.2           10     3
      t.2.2.1          8     0
      t.2.2.2          1     0
      t.2.2.3          1     0
  t.3              2     0

@@ Line 18: / Line 18: @@
 ; -help : usage information
 ; -dir workdir : ensemble directory
-; -ctag tag :
+; -ctag alt : read cluster data from <TT>alt.cluster</TT> file
 == Examples ==
 <mmtsbToolExample cmd="showcluster.pl" set="/apps/mmtsb/bench/showcluster.pl-test/test1"></mmtsbToolExample>