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Difference between revisions of "Main Page"
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== Structure preparation == | == Structure preparation == | ||
| − | * <TT>[[convpdb.pl]]</TT> | + | * <TT>[[convpdb.pl]]</TT> (conversion/manipulation of PDB files) |
| − | * <TT>[[complete.pl]]</TT> | + | * <TT>[[complete.pl]]</TT> (completion of missing atoms) |
| − | * <TT>[[mutate.pl]]</TT> | + | * <TT>[[mutate.pl]]</TT> (amino acid residue mutations) |
| − | * <TT>[[mutateNA.pl]]</TT> | + | * <TT>[[mutateNA.pl]]</TT> (nucleotide mutations) |
== Structure analysis == | == Structure analysis == | ||
Revision as of 02:04, 11 August 2006
Contents
Structure preparation
- convpdb.pl (conversion/manipulation of PDB files)
- complete.pl (completion of missing atoms)
- mutate.pl (amino acid residue mutations)
- mutateNA.pl (nucleotide mutations)
Structure analysis
centerOfMass.pl cluster.pl contact.pl countIntCont.pl dihed.pl lsqfit.pl mindist.pl qscore.pl rgyr.pl rms.pl vicinity.pl
All-Atom Modeling
enerAmber.pl enerCHARMM.pl analyzeCHARMM.pl equiCHARMM.pl genPSF.pl mdAmber.pl mdCHARMM.pl minAmber.pl minCHARMM.pl nmaCHARMM.pl pbCHARMM.pl pdb2traj.pl processDCD.pl scalarCHARMM.pl
SICHO Lattice Modeling
genchain.pl geninput.pl checkchain.pl genrestr.pl genseq.pl hlamc.pl latticeener.pl latticesim.pl rebuild.pl xtracttra.pl
Replica Exchange Sampling
aarex.pl aarexAmaber.pl latrex.pl gorex.pl hlamcrex.pl readArchive.pl rexanalysis.pl rexinfo.pl rexserver.pl writeArchive.pl
Ensemble Computing
bestcluster.pl calcprop.pl checkin.pl enscluster.pl enscut.pl enseval.pl ensfiles.pl enslatsim.pl ensmin.pl ensrun.pl getprop.pl showcluster.pl jobserver.pl setprop.pl
Structure Prediction
buildModel.pl psiblast.pl psipred.pl