Difference between revisions of "Main Page"

Revision as of 01:55, 11 August 2006

Structure preparation

convpdb.pl complete.pl mutate.pl mutateNA.pl

Structure analysis

centerOfMass.pl cluster.pl contact.pl countIntCont.pl dihed.pl lsqfit.pl mindist.pl

All-Atom Modeling

enerAmber.pl enerCHARMM.pl analyzeCHARMM.pl equiCHARMM.pl genPSF.pl mdAmber.pl mdCHARMM.pl minAmber.pl minCHARMM.pl nmaCHARMM.pl pbCHARMM.pl pdb2traj.pl processDCD.pl

Structure Prediction

buildModel.pl

Ensemble Computing

bestcluster.pl calcprop.pl checkin.pl enscluster.pl enscut.pl enseval.pl ensfiles.pl enslatsim.pl ensmin.pl ensrun.pl getprop.pl

Replica Exchange Sampling

aarex.pl aarexAmaber.pl latrex.pl gorex.pl hlamcrex.pl

SICHO Lattice Modeling

genchain.pl geninput.pl checkchain.pl genrestr.pl genseq.pl hlamc.pl latticeener.pl latticesim.pl

jobserver.pl psiblast.pl psipred.pl qscore.pl readArchive.pl rebuild.pl rexanalysis.pl rexinfo.pl rexserver.pl rgyr.pl rms.pl scalarCHARMM.pl setprop.pl showcluster.pl vicinity.pl writeArchive.pl xtracttra.pl

@@ Line 1: / Line 1: @@
-<H3>All-Atom Modeling</H3>
+==Structure preparation==
+convpdb.pl
+complete.pl
+mutate.pl
+mutateNA.pl
+<H3>Structure analysis</H3>
-aarexAmber.pl
-aarex.pl
-analyzeCHARMM.pl
-bestcluster.pl
-buildModel.pl
-calcprop.pl
 centerOfMass.pl
-checkchain.pl
-checkin.pl
 cluster.pl
-complete.pl
 contact.pl
-convpdb.pl
 countIntCont.pl
 dihed.pl
+lsqfit.pl
+mindist.pl
+<H3>All-Atom Modeling</H3>
 enerAmber.pl
 enerCHARMM.pl
+analyzeCHARMM.pl
+equiCHARMM.pl
+genPSF.pl
+mdAmber.pl
+mdCHARMM.pl
+minAmber.pl
+minCHARMM.pl
+nmaCHARMM.pl
+pbCHARMM.pl
+pdb2traj.pl
+processDCD.pl
+<H3>Structure Prediction</H3>
+buildModel.pl
+<H3>Ensemble Computing</H3>
+bestcluster.pl
+calcprop.pl
+checkin.pl
 enscluster.pl
 enscut.pl
@@ Line 25: / Line 47: @@
 ensmin.pl
 ensrun.pl
-equiCHARMM.pl
+getprop.pl
+<H3>Replica Exchange Sampling</H3>
+aarex.pl
+aarexAmaber.pl
+latrex.pl
+gorex.pl
+hlamcrex.pl
+<H3>SICHO Lattice Modeling</H3>
 genchain.pl
 geninput.pl
-genPSF.pl
+checkchain.pl
 genrestr.pl
 genseq.pl
-getprop.pl
-gorex.pl
 hlamc.pl
-hlamcrex.pl
-jobserver.pl
-latrex.pl
 latticeener.pl
 latticesim.pl
-lsqfit.pl
-mdAmber.pl
-mdCHARMM.pl
+jobserver.pl
-minAmber.pl
-minCHARMM.pl
-mindist.pl
-mutateNA.pl
-mutate.pl
-nmaCHARMM.pl
-pbCHARMM.pl
-pdb2traj.pl
-processDCD.pl
 psiblast.pl
 psipred.pl
@@ Line 67: / Line 86: @@
 writeArchive.pl
 xtracttra.pl
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