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Difference between revisions of "Common applications of the MMTSB toolset"
From MMTSB
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==Preparing protein:DNA simulations (from PDBfile to CHARMM trajectory):== | ==Preparing protein:DNA simulations (from PDBfile to CHARMM trajectory):== | ||
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| − | + | <mmtsbToolExample cmd="common_applications" set="prep_protein+dna"></mmtsbToolExample> | |
==Preparing protein simulations for replica-exchange:== | ==Preparing protein simulations for replica-exchange:== | ||
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| − | + | <mmtsbToolExample cmd="common_applications" set="prep_aarex"></mmtsbToolExample> | |
==Visualizing the electrostatic surface potential of a macromolecule:== | ==Visualizing the electrostatic surface potential of a macromolecule:== | ||
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| − | + | <mmtsbToolExample cmd="common_applications" set="view_esp"></mmtsbToolExample> | |
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<b>For more examples,</b> download and follow the [http://www.mmtsb.org/workshops/mmtsb-ctbp_2006/Tutorials/WorkshopTutorials_2006.html tutorials] prepared for past MMTSB workshops. | <b>For more examples,</b> download and follow the [http://www.mmtsb.org/workshops/mmtsb-ctbp_2006/Tutorials/WorkshopTutorials_2006.html tutorials] prepared for past MMTSB workshops. | ||
Revision as of 15:36, 7 July 2009
Page currently under construction!!!
Contents
Preparing protein simulations (from PDBfile to CHARMM trajectory):
replace text
Preparing protein:DNA simulations (from PDBfile to CHARMM trajectory):
replace text
Preparing protein simulations for replica-exchange:
replace text
Visualizing the electrostatic surface potential of a macromolecule:
replace text
For more examples, download and follow the tutorials prepared for past MMTSB workshops.