MMTSB
Tool Set Documentation

qscore.pl

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Usage

usage:   qscore.pl [options] refPDB [cmpPDB]
options: [-all]
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Description

This utility calculates Q scores of a given PDB structure with respect to a reference.

Options

-help 
usage information
-all 
show short-range, medium-range, and long-range Q-scores separately

Examples

qscore.pl 1vii.exp.pdb 1vii.sample.1.pdb
calculates the overall Q-score of 1vii.sample.1.pdb with respect to the reference structure 1vii.exp.pdb

0.179517


qscore.pl -all 1vii.exp.pdb 1vii.sample.1.pdb
calculate short-, medium-, and long-range Q-scores of 1vii.sample.1.pdb with respect to the reference structure 1vii.exp.pdb

all:     0.179517
 short:  0.551687
 medium: 0.193963
 long:   0.034506