| At Michigan State University (since 2003) |
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2009
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53. |
Maryam Sayadi, Seiichiro Tanizaki, Michael Feig: Effect of membrane thickness on conformational sampling of phospholamban from computer simulations Biophysical Journal (2009) in press,
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52. |
Srinivasa M. Gopal, Shayantani Mukherjee, Yi-Ming Cheng, Michael Feig: PRIMO/PRIMONA: A coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy Proteins (2009) in press,
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51. |
Michael Feig, Zachary F. Burton: RNA Polymerase II Flexibility During Translocation From Normal Mode Analysis Proteins (2009) in press,
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50. |
B. R. Brooks, C. L. Brooks III, A. D. MacKerell, Jr., L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, M. Karplus: CHARMM: The Biomolecular Simulation Program Journal of Computational Chemistry (2009) 30, 1545-1614
Abstract
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49. |
Shayantani Mukherjee, Michael Feig: Conformational change in MSH2-MSH6 upon binding DNA coupled to ATPase activity Biophysical Journal (2009) 96, L63-L65
Abstract
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48. |
Maria I. Zavodszky, Andrew W. Stumpff-Kane, David J. Lee, Michael Feig: Scoring Confidence Index: Statistical Evaluation of Ligand Binding Mode Predictions Journal of Computer-Aided Molecular Design (2009) 23, 289-299
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47. |
Shayantani Mukherjee, Sean Law, Michael Feig: Deciphering the mismatch recognition cycle in MutS and MSH2-MSH6 using normal mode analysis Biophysical Journal (2009) 96, 1707-1720
Abstract
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2008
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46. |
Michael Feig: Is Alanine Dipeptide a Good Model for Representing the Torsional Preferences of Protein Backbones? Journal of Chemical Theory and Computation (2008) 4, 1555-1564
Abstract
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45. |
Imamura Daisuke, Ruanbao Zhou, Michael Feig, Lee Kroos: Evidence that the Bacillus subtilis SpoIIGA protein is a novel type of signal-transducing aspartic protease Journal of Biological Chemistry (2008) 283, 15287-15299
Abstract
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43. |
Kitiyaporn Wittayanarakul, Supot Hannongbua, Michael Feig: Accurate prediction of protonation state as a prerequisite for reliable MM-PB(GB)SA binding free energy calculations of HIV-1 protease inhibitors Journal of Computational Chemistry (2008) 29, 673-685
Abstract
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42. |
Andrew Stumpff-Kane, Katarzyna Maksimiak, Michael S. Lee, Michael Feig: Sampling of near-native protein conformations during protein structure refinement using a coarse-grained model, normal modes, and molecular dynamics simulations Proteins (2008) 70, 1345-1356
Abstract
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41. |
Seiichiro Tanizaki, Jacob W. Clifford, Brian D. Connelly, Michael Feig: Conformational Sampling of Peptides in Cellular Environments Biophysical Journal (2008) 94, 747-759
Abstract
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40. |
Yongcheng Zhou, Michael Feig, Guowei Wei: Highly Accurate Biomolecular Electrostatics in Continuum Dieletric Environments Journal of Computational Chemistry (2008) 29, 87-97
Abstract
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2007
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39. |
Michael Feig: Kinetics from Implicit Solvent Simulations of Biomolecules as a Function of Viscosity Journal of Chemical Theory and Computation (2007) 3, 1734-1748
Abstract
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38. |
Gabriela Montero-Moran, Meng Li, Erika Rendon-Huerta, Fabrice Jourdan, David Lowe, Andrew Stumpff-Kane, Michael Feig, Claudio Scazzocchio, Robert Hausinger: Purification and Characterization of the FeII- and alpha-Ketoglutarate-Dependent Xanthine Hydroxylase from Aspergillus nidulans Biochemistry (2007) 46, 5293-5304
Abstract
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2006
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37. |
Gauri W. Jawdekar, Andrej Hanzlowsky, Stacy L. Hovde, Blanka Jelencic, Michael Feig, James H. Geiger, and Ronald W. Henry: The unorthodox SNAP50 zinc finger domain contributes to co-operative promoter recognition by human SNAPc Journal of Biological Chemistry (2006) 281, 31050-31060
Abstract
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36. |
Jana Chocholousova, Michael Feig: Implicit Solvent Simulations of DNA and DNA-Protein Complexes: Agreement with Explicit Solvent vs. Experiment Journal of Physical Chemistry B (2006) 110, 17240-17251
Abstract
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35. |
Tina A. Müller, Maria I. Zavodszky, Michael Feig, Leslie A. Kuhn, Robert P. Hausinger: Structural Basis for the Enantiospecificities of R- and S-Specific Phenoxypropionate/α-Ketoglutarate Dioxygenases Protein Science (2006) 15, 1356-1368
Abstract
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34. |
Jerzy Jankun, Ansari M. Aleem, Sylvia Malgorzewicz, Maria Szkudlarek, Maria I. Zavodszky, David L. DeWitt, Michael Feig, Steven H. Selman, Ewa Skrzypczak-Jankun: Synthetic curcuminoids modulate the arachidonic acid metabolism of human P-12-LOX and reduce sprout formation of human endothelial cells Molecular Cancer Therapeutics (2006) 5, 1371-1382
Abstract
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33. |
Seiichiro Tanizaki, Michael Feig: Molecular Dynamics Simulations of Large Integral Membrane Proteins with an Implicit Membrane Model Journal of Physical Chemistry B (2006) 110, 548-556
Abstract
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32. |
Andrew Stumpff-Kane, Michael Feig: A Correlation-Based Method for the Enhancement of Scoring Functions on Funnel-Shaped Energy Landscapes Proteins (2006) 63, 155-164
Abstract
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31. |
Jana Chocholousova, Michael Feig: Balancing an Accurate Representation of the Molecular Surface in Generalized Born Formalisms with Integrator Stability in Molecular Dynamics Simulations Journal of Computational Chemistry (2006) 27, 719-729
Abstract
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30. |
Yong C. Zhou, Shan Zhao, Michael Feig, Guo W. Wei: High order matched interface and boundary method for elliptic equations with discontinuous coefficients and singular sources Journal of Computational Physics (2006) 213, 1-30
Abstract
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29. |
Michael Feig, Jana Chocholousova, Seiichiro Tanizaki: Extending the Horizon: Towards the Efficient Modeling of Large Biomolecular Complexes in Atomic Detail Theoretical Chemistry Accounts (2006) 116, 194-205
Abstract
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2005
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28. |
Xue Q. Gong, Chunfen Zhang, Michael Feig, Zachary F. Burton: Dynamic Error Correction and Regulation of Downstream Bubble Opening by Human RNA Polymerase II Molecular Cell (2005) 18, 461-470
Abstract
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27. |
Zachary F. Burton, Michael Feig, Xue Qian Gong, Chunfen Zhang, Yuri A. Nedialkov, Yalin Xiong: NTP-driven translocation and regulation of downstream template opening by multi-subunit RNA polymerases Biochemistry And Cell Biology (2005) 83, 486-496
Abstract
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26. |
Seiichiro Tanizaki, Michael Feig: A new generalized Born formalism for heterogeneous dielectric environments: Application to the implicit modeling of biological membranes Journal of Chemical Physics (2005) 122, 124706
Abstract
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2004
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23. |
Michael Feig, Charles L. Brooks III: Recent advances in the development and application of implicit solvent models in biomolecule simulations Current Opinion in Structural Biology (2004) 14, 217-224
Abstract
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22. |
Timothy F. Henshaw, Michael Feig, Robert P. Hausinger: Aberrant activity of the DNA repair enzyme AlkB Journal of Inorganic Biochemistry (2004) 98, 856-861
Abstract
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| Postdoctoral Training at the Scripps Research Institute (1999-2003) |
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2008
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44. |
Mark A. Olson, Michael Feig, Charles L. Brooks III: Prediction of Protein Loop Conformations Using Multiscale Modeling Methods with Physical Energy Scoring Functions Journal of Computational Chemistry (2008) 29, 820-831
Abstract
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2005
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25. |
Florence Tama, Michael Feig, Jun Liu, Charles L. Brooks III, Kenneth A. Taylor: The Requirement for Mechanical Coupling Between Head and S2 Domains in Smooth Muscle Myosin ATPase Regulation and its Implications for Dimeric Motor Function Journal of Molecular Biology (2005) 345, 837-854
Abstract
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2004
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24. |
Alexander D. MacKerell jr., Michael Feig, Charles L. Brooks III: Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations Journal of Computational Chemistry (2004) 25, 1400-1415
Abstract
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21. |
Alexander D. MacKerell jr., Michael Feig, Charles L. Brooks III: Improved treatment of the protein backbone in empiricial force fields Journal of the American Chemical Society (2004) 126, 698-699
Abstract
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20. |
Michael Feig, John Karanicolas, Charles L. Brooks III: MMTSB Tool Set: Enhanced Sampling and Multiscale Modeling Methods for Applications in Structural Biology Journal of Molecular Graphics and Modeling (2004) 22, 377-395
Abstract
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19. |
Michael Feig, Wonpil Im, Charles L. Brooks III: Implicit solvation based on generalized Born theory in different dielectric environments Journal of Chemical Physics (2004) 120, 903-911
Abstract
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18. |
Michael Feig, Alexey Onufriev, Michael S. Lee, Wonpil Im, David A. Case, Charles L. Brooks III: Performance comparison of generalized Born and Poisson methods in the calculation of electrostatic solvation energies for protein structures Journal of Computational Chemistry (2004) 25, 265-284
Abstract
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2003
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17. |
Wonpil Im, Michael Feig, Charles L. Brooks III: An implicit membrane generalized Born theory for the study of structure, stability, and interactions of membrane proteins Biophysical Journal (2003) 85, 2900-2918
Abstract
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16. |
Michael Feig, Alexander D. MacKerell jr., Charles L. Brooks III: The force field influence on the observation of pi-helical protein structures in molecular dynamics simulations Journal of Physical Chemistry B (2003) 107, 2831-2836
Abstract
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15. |
Michael S. Lee, Michael Feig, Freddie R. Salsbury jr., Charles L. Brooks III: A New Analytical Approximation to the Standard Molecular Volume Definition And Its Application to Generalized Born Calculations Journal of Computational Chemistry (2003) 24, 1348-1356
Abstract
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2002
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14. |
Michael Feig, Charles L. Brooks III: Evaluating CASP4 Predictions with Physical Energy Functions Proteins (2002) 49, 232-245
Abstract
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13. |
Andras Fiser, Michael Feig, Charles L. Brooks III, Andrej Sali: Evolution and Physics in Comparative Protein Structure Modeling Accounts of Chemical Research (2002) 35, 413-421
Abstract
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2000
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10. |
Michael Feig, Piotr Rotkiewicz, Andrzej Kolinski, Jeffrey Skolnick, Charles L. Brooks III: Accurate Reconstruction of All-Atom Protein Representations from Side-Chain-Based Low-Resolution Models Proteins (2000) 41, 86-97
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| Graduate Studies at the University of Houston (1994-1999) |
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2002
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12. |
Vladimir Makarov, B. Montgomery Pettitt, Michael Feig: Solvation and Hydration of Proteins and Nucleic Acids: A Theoretical View of Simulation and Experiment Accounts of Chemical Research (2002) 35, 376-384
Abstract
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2001
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11. |
Michael Feig, Martin Zacharias, B. Montgomery Pettitt: Conformations of an Adenine Bulge in a DNA Octamer And Its Influence on DNA Structure from Molecular Dynamics Simulations Biophysical Journal (2001) 81, 352-370
Abstract
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1999
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9. |
Olle Larsson, Michael Feig, Lennart Johnsson: Some Metacomputing Experiences for Scientific Applications Parallel Processing Letters (1999) 9, 243-252
Abstract
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8. |
Michael Feig, B. Montgomery Pettitt: Sodium and Chlorine Ions as Part of the DNA Solvation Shell Biophysical Journal (1999) 77, 1769-1781
Abstract
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7. |
Michael Feig, B. Montgomery Pettitt: Modeling High Resolution Hydration Patterns in Correlation with DNA Sequence and Conformation Journal of Molecular Biology (1999) 286, 1075-1095
Abstract
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6. |
Michael Feig, Matin Abdullah, Lennart Johnsson, B. Montgomery Pettitt: Large Scale Distributed Data Repository: Design of a Molecular Dynamics Trajectory Database Future Generation Computer Systems (1999) 16, 101-110
Abstract
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1998
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5. |
Michael Feig, B. Montgomery Pettitt: A molecular simulation picture of DNA hydration around A- and B-DNA Biopolymers (Nucleic Acid Sciences) (1998) 48, 199-209
Abstract
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4. |
Michael Feig, B. Montgomery Pettitt: Crystallographic water sites from a theoretical perspective Structure (1998) 6, 1351-1354
Abstract
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3. |
Vladimir A. Makarov, Michael Feig, B. Kim Andrews, B. Montgomery Pettitt: Diffusion of Solvent around Biomolecular Solutes. A Molecular Dynamics Simulations Study Biophysical Journal (1998) 75, 150-158
Abstract
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2. |
Michael Feig, B. Montgomery Pettitt: Structural Equilibrium of DNA Represented with Different Force Fields Biophysical Journal (1998) 75, 134-149
Abstract
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1997
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1. |
Michael Feig, B. Montgomery Pettitt: Experiment vs. force fields: DNA conformation from molecular dynamics simulations Journal of Physical Chemistry B (1997) 101, 7361-7363
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